PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40267
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 134aa    MW: 15591.7 Da    PI: 9.7469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40267genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-365982103
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll++i
    PEQU_40267   5 FLTKTYQLVDDPSTNHIVSWGdDRVSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKHLLCEI 92 
                   9********************6667*****************************************999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                   +r+k++
    PEQU_40267  93 HRRKTS 98 
                   ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.0E-58195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-32295IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-36295IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-20528IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-31595IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-204456IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404569IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MPAPFLTKTY QLVDDPSTNH IVSWGDDRVS TFVVWRPPEF ARDLLPNYFK HNNFSSFVRQ  60
LNTYGFRKVV PERWEFANEF FRKGEKHLLC EIHRRKTSAA AVAAATSLHP PFSPLFQNPF  120
DDYYSPPGSA KRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-22510020125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560021e-86AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596708.13e-96heat stress transcription factor B-4c-like
SwissprotQ9C6355e-61HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2I0X7Q66e-80A0A2I0X7Q6_9ASPA; Heat stress transcription factor B-4
STRINGGSMUA_Achr9P15370_0011e-65(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-63heat shock transcription factor B4