PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40300
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 345aa    MW: 38418 Da    PI: 8.2199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40300genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-322481260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  +++++ei+Y+g+H h+k
  PEQU_40300 24 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNI-EGEITEIVYKGTHSHPK 81
                8****************************************.***************85 PP
2WRKY105.52.8e-33199257159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+
  PEQU_40300 199 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTMGCPVRKHVERASHDLRSVITTYEGKHNHD 257
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.6991882IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-281882IPR003657WRKY domain
SuperFamilySSF1182909.81E-251982IPR003657WRKY domain
SMARTSM007742.8E-332381IPR003657WRKY domain
PfamPF031066.0E-252480IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37184259IPR003657WRKY domain
SuperFamilySSF1182902.09E-29191259IPR003657WRKY domain
PROSITE profilePS5081138.457194259IPR003657WRKY domain
SMARTSM007744.0E-38199258IPR003657WRKY domain
PfamPF031061.0E-25200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQTLQLNTQV NGNNNIIRDQ RKSDDGYNWR KYGQKQVKGS ENPRSYYKCT FPNCPTKKKV  60
ERNIEGEITE IVYKGTHSHP KPQSTRRNSS SSSSQQQIHS LAIVAVGSEA SEHSHGGRLG  120
AANMDSAATP DDSSISFGED DMDLSSHRSN LGGDEFDEEE PEAKRWRKAG ENDGASAGGN  180
KAVREPRVVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTTMGC PVRKHVERAS  240
HDLRSVITTY EGKHNHDVPA ARGSRQPEDN SHSTTTAIRP SAISAAPINS FFGQRPNSNF  300
QSSHGSFTLN MLSNQGNYGS NYMNQQQPNT KEEPKEDMFL ESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3724260878Probable WRKY transcription factor 4
2lex_A1e-3724260878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595512.10.0WRKY transcription factor WRKY24-like isoform X2
SwissprotQ6B6R41e-130WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2I0XBJ30.0A0A2I0XBJ3_9ASPA; Putative WRKY transcription factor 33
STRINGXP_008804160.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-107WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]