PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40332
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 260aa    MW: 29248.4 Da    PI: 9.7403
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40332genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1664109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
       PEQU_40332  64 RGHWRPAEDSKLKELVSMYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 109
                      899*****************************.***********996 PP
2Myb_DNA-binding55.81.1e-17116159146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
       PEQU_40332 116 RSAFTEEEEEKLMAAHRLYGNK-WAMIARVFP-GRTDNAVKNHWHV 159
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.59559110IPR017930Myb domain
SMARTSM007174.8E-1463112IPR001005SANT/Myb domain
PfamPF002495.4E-1664109IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2864157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2665117IPR009057Homeodomain-like
CDDcd001672.41E-1367108No hitNo description
PROSITE profilePS5129426.683111165IPR017930Myb domain
SMARTSM007178.8E-15115163IPR001005SANT/Myb domain
PfamPF002492.1E-14116158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-21118164IPR009057Homeodomain-like
CDDcd001671.34E-12118158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MISLSINPST SHSTHKPFPF PACSETTEVF GEKHIISVAE EEISRDGGGE NTTDSSGQSK  60
LTARGHWRPA EDSKLKELVS MYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRSAFT  120
EEEEEKLMAA HRLYGNKWAM IARVFPGRTD NAVKNHWHVI MARKYREQSS AHRRRKLNQA  180
MHLRLEEITA SSRPLPPFHF PSSIVGSSPP HLIPNGGMAS LRQKPSDCII SGMLTFFSCN  240
ISSLLFLPVL YPSAITLILP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-34631646107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598600.11e-172transcriptional activator Myb-like
TrEMBLA0A2I0WGI21e-135A0A2I0WGI2_9ASPA; Transcription factor MYB44
STRINGXP_008783843.11e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-75myb domain protein 117