PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40345
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 137aa    MW: 16126.8 Da    PI: 10.5397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40345genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-051638123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C k F r  nL+ H r H
  PEQU_40345 16 FVCEICAKGFQRDQNLQLHRRGH 38
                89*******************88 PP
2zf-C2H214.10.0001495117123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +   s+ k H +t+
  PEQU_40345  95 WKCEKCSKKYAVYSDWKAHVKTC 117
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.88E-71538No hitNo description
Gene3DG3DSA:3.30.160.602.2E-51538IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11638IPR015880Zinc finger, C2H2-like
PfamPF121713.8E-51638IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8031638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-583116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.88E-790115No hitNo description
SMARTSM003559795115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
EVVALSPKSL LATNRFVCEI CAKGFQRDQN LQLHRRGHNL PWRLRQRNNN GKEVIKKRVY  60
VCPEPSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVYSDW KAHVKTCGTR  120
EYKCHCGTLF SRFVRFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-2191137349Zinc finger protein JACKDAW
5b3h_F1e-2191137349Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571303.19e-95protein indeterminate-domain 7-like
SwissprotQ9SCQ62e-81IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2I0W4163e-86A0A2I0W416_9ASPA; Zinc finger protein MAGPIE
STRINGGorai.009G203800.15e-85(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-73indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]