PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40348
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 305aa    MW: 35167.6 Da    PI: 4.9867
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40348genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.47.5e-081551743
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                + r  t+  R +g+ KK eE+S LC++ ++v   s++
  PEQU_40348 15 RARRSTYMTRWKGLKKKTEEISLLCGVPALVAARSPE 51
                56889**********************9999777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.302161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-5160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-13178IPR002100Transcription factor, MADS-box
PfamPF003191.2E-61451IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAKLPIKY REQVRARRST YMTRWKGLKK KTEEISLLCG VPALVAARSP EFNTVEFWPE  60
KGTPEFHRIR ERYLCLHKKR NNSDDKGDEG SGNSAEQIPC LPMSSSCVST TLFHEEMVAM  120
EIKLKEIRER LQFFQAHSHT ENLAGHFPGE EEQHLAPYPV STPLQQDHLS YDQLPPDFAT  180
FNIFLQQDEN LARHFPFPGE KEQHLAPYAV STPLQQYHLS YDQLTPDFAA SNMLLHQNDL  240
PMINLEEISP LSPPLPPYDQ HTLSFADFST EDPSVGMLPS DSPMWSNLDD WTWFDSIFLD  300
LEYVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599766.11e-173uncharacterized protein LOC110039147
TrEMBLA0A455LA632e-62A0A455LA63_9ASPA; MADS-box protein-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.31e-08M-type_MADS family protein