PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_40468

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WRKY

Protein Properties

Length: 394aa MW: 43732.8 Da PI: 8.1046

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40468	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.3e-29	180	239	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed ++++ tYeg+Hnh+ PEQU_40468 180 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILISTYEGNHNHP 239 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-31	165	241	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-26	173	241	IPR003657	WRKY domain
PROSITE profile	PS50811	29.034	175	241	IPR003657	WRKY domain
SMART	SM00774	8.2E-36	180	240	IPR003657	WRKY domain
Pfam	PF03106	4.0E-26	181	239	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MCEVREENER LKAILAQILR DYQSLQTRIF EIIKRGQAKQ KPAEADPSSL SLHNNEHELV 60 SLCLGSGPSF MIKQEEKTSC NGKETKGEKD NQIKRGLALG MECKMDEEEN DAKNEVQQSN 120 SLESSSEGTE NKEETAVGDQ RWPPSKAMKN LKSEEDEASP QVQVKRARVS VRARCDAHTM 180 NDGCQWRKYG QKISKGNPCP RAYYRCTVAP GCPVRKQVQR CAEDMSILIS TYEGNHNHPL 240 PISATAMAST TAAAASMLIS ASSSSLPVTS PHQITTGLNF SFPDISHQNA QFYTSNPSIS 300 PSLSQPTITL DLTNPHGFSS TSPRSFYSQA SFSFSPSESS SSWKSGGGYF NHGAHQPYYK 360 SLYRQSQESL FHSYAHKVNI ISFSQYSFTI ITKK

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MCEVREENER LKAILAQILR DYQSLQTRIF EIIKRGQAKQ KPAEADPSSL SLHNNEHELV  60
SLCLGSGPSF MIKQEEKTSC NGKETKGEKD NQIKRGLALG MECKMDEEEN DAKNEVQQSN  120
SLESSSEGTE NKEETAVGDQ RWPPSKAMKN LKSEEDEASP QVQVKRARVS VRARCDAHTM  180
NDGCQWRKYG QKISKGNPCP RAYYRCTVAP GCPVRKQVQR CAEDMSILIS TYEGNHNHPL  240
PISATAMAST TAAAASMLIS ASSSSLPVTS PHQITTGLNF SFPDISHQNA QFYTSNPSIS  300
PSLSQPTITL DLTNPHGFSS TSPRSFYSQA SFSFSPSESS SSWKSGGGYF NHGAHQPYYK  360
SLYRQSQESL FHSYAHKVNI ISFSQYSFTI ITKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	167	241	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020588396.1	0.0	probable WRKY transcription factor 72, partial
Swissprot	A0A3Q7GFB5	4e-83	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A061EM50	1e-98	A0A061EM50_THECC; WRKY DNA-binding protein 72, putative
TrEMBL	A0A1D1YDU1	1e-98	A0A1D1YDU1_9ARAE; Putative WRKY transcription factor 72 (Fragment)
STRING	EOY03394	2e-99	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	7e-64	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]