PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40552
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 87aa    MW: 9873.8 Da    PI: 8.991
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40552genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.4e-091460447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     W++e  +l+ +a +++  +   +W +Iar +g g+++++ + ++  +
       PEQU_40552 14 WSKEQNKLFERALAMYDEDtpnRWQKIARFVGGGKSPEDARRHYERL 60
                     *****************99************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.635965IPR017884SANT domain
SMARTSM007172.2E-81063IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-41162IPR009057Homeodomain-like
SuperFamilySSF466891.2E-131269IPR009057Homeodomain-like
PfamPF002494.1E-71461IPR001005SANT/Myb domain
CDDcd001671.85E-51661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSSTSRSS SSGWSKEQNK LFERALAMYD EDTPNRWQKI ARFVGGGKSP EDARRHYERL  60
LEDVQKIESG DVPIPNYSTS AANQQHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-27585281RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595489.11e-59protein RADIALIS-like 3
SwissprotQ1A1731e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2I0V7031e-43A0A2I0V703_9ASPA; Transcription factor RADIALIS
TrEMBLA0A482DP251e-43A0A482DP25_9ASPA; RADIALIS 3 (Fragment)
STRINGGSMUA_Achr2P22930_0013e-33(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-26RAD-like 1