PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_40578

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 142aa MW: 15596.8 Da PI: 8.0588

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40578	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.7	2.4e-44	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeA+ar++dPvyG+vg i+ lqqq++ l++el+++++ PEQU_40578 16 PCAACKFLRRKCMQGCIFAPYFPPEEPQKFFNVHKIFGASNVTKLLNELLPHQREDAVNSLAYEADARMKDPVYGCVGAISVLQQQVQLLQKELDAANA 114 7*********************************************************************************************99886 PP DUF260 100 e 100 + PEQU_40578 115 N 115 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.257	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-43	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
AAMSSYSSSS ASSNSPCAAC KFLRRKCMQG CIFAPYFPPE EPQKFFNVHK IFGASNVTKL 60 LNELLPHQRE DAVNSLAYEA DARMKDPVYG CVGAISVLQQ QVQLLQKELD AANANLLKYA 120 CSYCHPSAHA GHQQVLLPYH SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-65	7	122	2	117	LOB family transfactor Ramosa2.1
5ly0_B	1e-65	7	122	2	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572649.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572651.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572652.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572653.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572654.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572655.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020594900.1	1e-100	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	7e-67	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A200RB00	2e-70	A0A200RB00_9MAGN; Uncharacterized protein
STRING	XP_008464527.1	4e-70	(Cucumis melo)
STRING	XP_004173060.1	4e-70	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-56	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]