PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_40622

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 130aa MW: 14666.8 Da PI: 4.4432

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40622	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.9	5.3e-22	15	70	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeered 56 +CaaC++l r+C++dC+lapyfp++++ kfa+vhk+FGa+nv+k+l++ ee +e+ PEQU_40622 15 PCAACRLLHRRCTTDCMLAPYFPSDNSDKFAVVHKVFGATNVIKMLHSCIEELQEQ 70 7**********************************************996665443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.065	14	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-21	15	82	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MDFQSLSCWA KPELPCAACR LLHRRCTTDC MLAPYFPSDN SDKFAVVHKV FGATNVIKML 60 HSCIEELQEQ IQGAERLLLE SQEQKNQLLC FLNQPFAPPY EEMSGCGGVE NGLFGDSLMF 120 MDRAYGFDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-14	15	61	11	57	LOB family transfactor Ramosa2.1
5ly0_B	2e-14	15	61	11	57	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020597578.1	2e-94	LOB domain-containing protein 28-like
TrEMBL	A0A2H3XCN2	3e-24	A0A2H3XCN2_PHODC; LOB domain-containing protein 25-like
STRING	XP_008781832.1	5e-25	(Phoenix dactylifera)
STRING	XP_008781843.1	5e-25	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17783	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-20	LBD family protein