PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40925
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 192aa    MW: 22520.5 Da    PI: 8.7927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40925genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-087594626
                -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                C++f+  G+Ck Gd C +aHg
  PEQU_40925 75 CPDFRM-GYCKKGDACEYAHG 94
                999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.6E-56995IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8596996IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-57097IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-67595IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-67594IPR000571Zinc finger, CCCH-type
SMARTSM0035636104127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MELRYLPSNS DSKAVDLANP HLDPYSCDSF RIYQFKVKLC TRGRSHDWTE CPFAHPGEKA  60
RRRDPRKFQY SGISCPDFRM GYCKKGDACE YAHGVFESWL HPSKYRTQSC KDGRACRRRV  120
CFFAHTPEQL RLPPNQESSS KSWINEMASS SQRVRLEKTE EPEMRRIERK TEVVMNDGRE  180
SPDFGWVLDL LK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599180.11e-142zinc finger CCCH domain-containing protein 23-like
SwissprotQ9FU274e-66C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2I0XCM43e-90A0A2I0XCM4_9ASPA; Zinc finger CCCH domain-containing protein 20
STRINGPGSC0003DMT4000654633e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-68C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]