PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40935
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20063.4 Da    PI: 10.1437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.23.3e-161151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i+n+  r  t+ kRr+g++KK +ELS+LCd++++ ii++++
  PEQU_40935 11 ISNDATRRATLKKRRKGLIKKVNELSILCDVRACSIIYAPN 51
                99************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.213151IPR002100Transcription factor, MADS-box
CDDcd002661.67E-30285No hitNo description
PRINTSPR004045.7E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-23394IPR002100Transcription factor, MADS-box
PfamPF003192.2E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MARKKVKLAW ISNDATRRAT LKKRRKGLIK KVNELSILCD VRACSIIYAP NEPQPEAWPS  60
PQEATRMLSR FRAMPEMERC KKMMNQDSFL RQRVSKLHDQ LCRQDRVIRE LESAALLREC  120
VAGASIDNLR IEELAALAWI LEDKTKGIQD RIDHLRFTAA FEGTISGDAK QVAVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWISNDATRRATLKKRR
22125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594644.11e-126agamous-like MADS-box protein AGL80, partial
RefseqXP_020598418.11e-126agamous-like MADS-box protein AGL80, partial
TrEMBLA0A1L1WL104e-74A0A1L1WL10_9ASPA; MADS25
STRINGGSMUA_Achr3P08500_0011e-67(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-38AGAMOUS-like 80