PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40997
Common NameMYB1
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 216aa    MW: 24828.1 Da    PI: 7.7184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40997genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-152368148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+  +eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
       PEQU_40997 23 RGNIGPEEEDLIIRLHCLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 68
                     677889****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-20476IPR009057Homeodomain-like
PROSITE profilePS500904.147417IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-11430IPR009057Homeodomain-like
PROSITE profilePS5129423.9281872IPR017930Myb domain
SMARTSM007173.0E-132270IPR001005SANT/Myb domain
PfamPF002491.2E-132368IPR001005SANT/Myb domain
CDDcd001671.11E-92868No hitNo description
Gene3DG3DSA:1.10.10.608.0E-213168IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
GLLRCGKSCR LRWMNYLRPD IKRGNIGPEE EDLIIRLHCL LGNRWSLIAG RLPGRTDNEI  60
KNYWNSHLSK KLKKQGFIIR ECTPRPKRSG APSYHKKIKC TNNKFAENIQ NNDADECNKI  120
YAPKPTRLKP CWSVMEKSES TIGECKKGTS DASSGTNDVD WASWTHEDHV EEFDQTAGLF  180
EGPYLDFASD FSMPNIESLD RLFNEYSQLL QLEVDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-1947240108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7694660.0KF769466.1 Phalaenopsis equestris MYB transcription factor 1 (MYB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596375.11e-161transcription factor WER-like
TrEMBLA0A096ZX301e-159A0A096ZX30_PHAEQ; MYB transcription factor 1
STRINGXP_008775013.13e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-41myb domain protein 5