PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41370
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 57aa    MW: 6151.34 Da    PI: 10.8848
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41370genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93.1e-141357246
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 ie++s     fskR++g++KKAe  S+L +a++ v+ fs+ g+l
  PEQU_41370 13 LIESSSVGMACFSKRLKGLFKKAEDFSILFGAKIGVLAFSQAGRL 57
                699999999*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-4457IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.993457IPR002100Transcription factor, MADS-box
CDDcd001206.64E-14557No hitNo description
SuperFamilySSF554552.22E-13556IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-10626IPR002100Transcription factor, MADS-box
PfamPF003192.8E-151457IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-102641IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-104157IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MAGKGRKKLD DKLIESSSVG MACFSKRLKG LFKKAEDFSI LFGAKIGVLA FSQAGRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528RKKLDDKLIESSSVGMACFSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591382.12e-21MADS-box transcription factor 23-like
TrEMBLA0A2I0X9H13e-20A0A2I0X9H1_9ASPA; MADS-box transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-10M-type_MADS family protein