PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41581
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 68aa    MW: 7270.64 Da    PI: 11.4885
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41581genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.6e-152468246
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 ie +s r v fskRr+g++KK e  S+L +a++ v+ fs+ g+l
  PEQU_41581 24 LIEASSARMVCFSKRRKGLFKKPEDFSILSGAKAGVLAFSQAGRL 68
                699***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.7591568IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-141567IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-91568IPR002100Transcription factor, MADS-box
CDDcd001201.09E-151668No hitNo description
PRINTSPR004042.5E-111737IPR002100Transcription factor, MADS-box
PfamPF003191.5E-162568IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-113752IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-115268IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
LSVRLAISSA AMAGKGRKKL DDKLIEASSA RMVCFSKRRK GLFKKPEDFS ILSGAKAGVL  60
AFSQAGRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020692232.12e-24protein MADS AFFECTING FLOWERING 5-like, partial
TrEMBLA0A2I0X9H13e-23A0A2I0X9H1_9ASPA; MADS-box transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.23e-12AGAMOUS-like 71