PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41790
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 180aa    MW: 20943.6 Da    PI: 10.3591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41790genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
       PEQU_41790 14 KGQWSPEEDAKLKSYIEQNGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     799********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.079966IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-191261IPR009057Homeodomain-like
SMARTSM007174.7E-111364IPR001005SANT/Myb domain
PfamPF002493.4E-151462IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-181589IPR009057Homeodomain-like
CDDcd001673.13E-81762No hitNo description
Gene3DG3DSA:1.10.10.601.1E-56288IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRAPCCDKE KVKKGQWSPE EDAKLKSYIE QNGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNLKHGS FSEEEENIIC SLFVRIGSRS AYEYTYIVKI NLKIKFCQQN SLKNLFFFNP  120
IVTIHSTSVK INLKIKFCQQ NSLKNLFFFN PIVTIHSTSV KINLKIKFCQ QNSLKNMFFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-56myb domain protein 84