PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41956
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 68aa    MW: 7317.42 Da    PI: 10.9966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41956genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-071133123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+Cp+C+k+F+++  L  H++ H
  PEQU_41956 11 YPCPYCSKRFPTSQALGGHQNAH 33
                99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-6937IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.16E-8938No hitNo description
PROSITE profilePS5015711.7391138IPR007087Zinc finger, C2H2
PfamPF139124.1E-91135IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
SPPPAPVRKM YPCPYCSKRF PTSQALGGHQ NAHKKERAAA ARRSSFSAAG KCISAVQRSE  60
HLSIPISP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020696060.11e-20uncharacterized protein LOC110109365
TrEMBLA0A2I0VUD52e-19A0A2I0VUD5_9ASPA; Zinc finger protein KNUCKLES
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-10C2H2 family protein