PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41959
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 122aa    MW: 14154.6 Da    PI: 10.1084
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41959genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1520109198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffkv++p + ++   l +p+kfa++++ + e+    t++d+ grsW   +  ++k++   + ++GW +Fvk  ++  g f+vFk++g+++f  +vkvf+
  PEQU_41959  20 FFKVMLPGYLNE---LAIPRKFARNMSVERER--GATIRDPVGRSWHADV--EGKGEDlWFCGEGWMNFVKGLEIGLGFFLVFKYKGNMDF--NVKVFD 109
                 778886655554...67******777555444..58999***********..88888877889****************************..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1915113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.47617111IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-2017118IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-1319109No hitNo description
SMARTSM010195.2E-1220111IPR003340B3 DNA binding domain
PfamPF023621.2E-1220109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MAKVAMKKKK RKKKNGATHF FKVMLPGYLN ELAIPRKFAR NMSVERERGA TIRDPVGRSW  60
HADVEGKGED LWFCGEGWMN FVKGLEIGLG FFLVFKYKGN MDFNVKVFDL TACEVEYSHE  120
IW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611KKKKRK
2613KKKKRKKK
3713KKKRKKK
4812KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594303.13e-86B3 domain-containing protein At3g18960-like
TrEMBLA0A2I0W2745e-61A0A2I0W274_9ASPA; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-15B3 family protein