PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_42049
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HB-other
Protein Properties Length: 75aa    MW: 8880.3 Da    PI: 9.6581
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_42049genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-182275352
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR
  PEQU_42049 22 KYVRYTPEQVEALERVYMECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRR 75
                5679*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.431775IPR001356Homeobox domain
SMARTSM003891.8E-51975IPR001356Homeobox domain
CDDcd000861.89E-122275No hitNo description
SuperFamilySSF466891.71E-152275IPR009057Homeodomain-like
PfamPF000467.0E-162375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-172575IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MATMGKDGKS QQLELQQIDA GKYVRYTPEQ VEALERVYME CPKPSSLRRQ QLIRECPILS  60
NIEPKQIKVW FQNRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578108.15e-46LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX32-like
SwissprotA2ZMN91e-34HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM961e-34HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A2I0XDB77e-42A0A2I0XDB7_9ASPA; Homeobox-leucine zipper protein HOX32
STRINGGRMZM2G023291_P012e-34(Zea mays)
STRINGGSMUA_Achr4P31660_0013e-34(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1849158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.17e-37HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]