PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_42098
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 336aa    MW: 37217.4 Da    PI: 6.5183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_42098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20159207355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  PEQU_42098 159 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAMAYDKAAYRLRG 207
                 8******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.71E-33157217No hitNo description
Gene3DG3DSA:3.30.730.103.0E-32158216IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22158216IPR016177DNA-binding domain
PROSITE profilePS5103223.13158215IPR001471AP2/ERF domain
SMARTSM003807.7E-39158221IPR001471AP2/ERF domain
PfamPF008477.7E-14159207IPR001471AP2/ERF domain
PRINTSPR003678.5E-11159170IPR001471AP2/ERF domain
PRINTSPR003678.5E-11181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAAAINLQNS WPFYSSDSSG EELMQALEPF IKRAPSSSSS SSPSPSPSLS YSPTQAPTFS  60
SSPSSSSFYS PFHSSLFSQN SVLDFPSSSI GLTHLNSDQI QQIQSQFYLQ QQHQMQHPIL  120
PDNIQSLPPP LPQRQSFLSP RPAAMKHTAA TASKPLKLFR GVRQRHWGKW VAEIRLPRNR  180
TRLWLGTFDT AEEAAMAYDK AAYRLRGDSA RLNFPNLRQN GSHLGSPLHA SIDAKLQVIC  240
EELSKAPAKQ GRGAASKQIL LQKSDLDIPV VAENKPESSV EETELSFSSS SSSSQASSPV  300
SEMDQLDFTE APWDESENFV LRKYPSWEID WDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20157220467ATERF1
3gcc_A1e-20157220467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585570.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2I0WZ471e-177A0A2I0WZ47_9ASPA; Ethylene-responsive transcription factor RAP2-4
STRINGPOPTR_0005s16690.19e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-48related to AP2 4