PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_42108
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 215aa    MW: 24673.7 Da    PI: 6.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_42108genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09123170455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR+riN+++  L++l+P +     k +  a++L + ++Y++sLq
  PEQU_42108 123 SHSLAERVRRERINEKMRCLQDLVPGC----YKTMGTATMLDEIINYVHSLQ 170
                 8*************************9....355999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.26E-10117172No hitNo description
SuperFamilySSF474592.49E-15117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-7123170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSDYTNNLKL PSPFSFTEIA HFAELGENAM ENPSPHFTPE AFSFPLVHNL PNFLPHDHHK  60
PVSEPATDNK RKQSTANHLE EEENSKRRKE GLKESARSRN SDGGEKQKEV VHVRARRGQA  120
TDSHSLAERV RRERINEKMR CLQDLVPGCY KTMGTATMLD EIINYVHSLQ NQFLSMKLSA  180
ASSFYDFELD VQSMAAAQQV IYINNYLFIH LFFFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16988KRKQSTANHLEEEENSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597025.11e-146transcription factor BEE 1-like
TrEMBLA0A2H3YEZ16e-58A0A2H3YEZ1_PHODC; transcription factor bHLH75-like isoform X1
STRINGXP_008797805.11e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-46BR enhanced expression 1