PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_42161
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 260aa    MW: 29206.1 Da    PI: 7.0455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_42161genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-17552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l +++  +G g+W++ ar+ g++Rt+k+c++rw++yl
       PEQU_42161  5 RGPWTLEEDVVLMNYISSHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52
                     89********************************************97 PP
2Myb_DNA-binding54.42.8e-1758101146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       PEQU_42161  58 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 101
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.543156IPR017930Myb domain
SuperFamilySSF466893.02E-31299IPR009057Homeodomain-like
SMARTSM007173.7E-13454IPR001005SANT/Myb domain
PfamPF002496.0E-15552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-23659IPR009057Homeodomain-like
CDDcd001675.66E-10752No hitNo description
SMARTSM007171.6E-1557105IPR001005SANT/Myb domain
PROSITE profilePS5129419.7157107IPR017930Myb domain
PfamPF002494.3E-1658101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2460106IPR009057Homeodomain-like
CDDcd001677.94E-1262101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MELRRGPWTL EEDVVLMNYI SSHGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPDVRRGN  60
ITPEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKHL QCDVDSKQFK  120
DVMRYLWMPR LIERIRAASA NSTVVESVAE YGNLAGGELP FVVGAGWGGL GEIVKPGPES  180
PATTVSSSGA AGYEVAEKVP AAGEGIQLPQ QISGGLWPEA VMSSPGYAYQ GLPELEQYWG  240
LGGEIGENLW SMEDVWYLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-25210524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587904.10.0transcription factor MYB78-like
SwissprotQ2QZJ89e-89JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2I0W9P21e-162A0A2I0W9P2_9ASPA; Myb-related protein 305
STRINGXP_008793362.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-83myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]