PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000239
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 185aa    MW: 21610.1 Da    PI: 10.4289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000239genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-12811671184
                           HHT.T-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3  11 lks.grlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           +++ +r+ +p +++++              + k  +++ ++++d++g+  ++k++ +k+ gr v+ +GW++ v++n+ + gD + + +
  PGSC0003DMP400000239  81 NANlSRFLIPVECCSKLihymtrlerekilN-KDDRGINVSVMDPKGNLHDMKFTGWKSLGRLVFNRGWNNLVRDNQFQKGDLLELWH 167
                           444499********99999999998888752.334899*********999999888**************************987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1669171IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.75572184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1273170IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-1273179No hitNo description
PfamPF023625.2E-983166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTTIRLFGND IKVSEKKEVK SIMLFGTRIF FQSPALNNNN NDRFINMADL PPRSMHLAIE  60
SIRGSRPVYM GWKYLENSDI NANLSRFLIP VECCSKLIHY MTRLEREKIL NKDDRGINVS  120
VMDPKGNLHD MKFTGWKSLG RLVFNRGWNN LVRDNQFQKG DLLELWHFRM PNNKPCFAIN  180
IIRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081571.11e-116B3 domain-containing protein At2g32645-like
TrEMBLM0ZGI11e-133M0ZGI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000003141e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116791115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-09B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]