PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000240
Common NameLOC102586532
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 185aa    MW: 21424.8 Da    PI: 10.2816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000240genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.8e-12831771294
                           HTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3  12 ksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           +++r+ +p + +++             +++  +++ ++++d++g+s ++k++ +k+ +r v+ +GW++ v+ n+L+ g  + + + ++ 
  PGSC0003DMP400000240  83 NLSRFLIPAEWCAKLllhmtqsesqkiQSEDDRGINVSVMDPKGNSHDMKFTEWKSLKRLVFNRGWNKLVENNQLQKGNLLHLWHFRTP 171
                           56899999999999999999888877755555999*******************************************99988776666 PP

                           EE..EE CS
                    B3  89 efelvv 94 
                           + ++++
  PGSC0003DMP400000240 172 DNKPCF 177
                           666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.20672184IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-1672171IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1373172IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-1273183No hitNo description
PfamPF023621.8E-982173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTTIRLFGND IKVIRLFGIQ ISPCPALKNN NMQLQLQLQR DDRFMNMPDS PPPSLRLAIQ  60
SVQGSRSLYM GWKYLENSDI NINLSRFLIP AEWCAKLLLH MTQSESQKIQ SEDDRGINVS  120
VMDPKGNSHD MKFTEWKSLK RLVFNRGWNK LVENNQLQKG NLLHLWHFRT PDNKPCFAVN  180
IIRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339802.11e-135PREDICTED: B3 domain-containing protein At2g31720-like
TrEMBLM0ZGI21e-133M0ZGI2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000003161e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116791115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.16e-09RAV family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]