PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000341
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 247aa    MW: 29288.2 Da    PI: 5.05
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000341genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.24e-16161425128
                   NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           + F P++++++ +yL   + +++l++++  ++ vd+y   ePw++ +   ++++  yf ++ +k++++ kr +r++ +g+Wk +   k+
  PGSC0003DMP400000341  16 YNFYPKESDVI-KYLLGFAIDEPLPEQHQfMRLVDLYAEkEPWEILEG--TNTNAGYFITPLKKEKPHHKRFKRIVGKGIWKIQDLAKK 101
                           68*********.7777777777765545449999*996549****633..345677********************************* PP

                   NAM  92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                           v++ +g+l+g  + + +     k++  k    +W+m ey+l
  PGSC0003DMP400000341 102 VFDDRGRLMGYVHHMKYTpdtnKKSIIKELFGEWLMTEYSL 142
                           ******************543222223334689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.80312167IPR003441NAC domain
SuperFamilySSF1019411.01E-1814167IPR003441NAC domain
PfamPF023654.1E-715142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTAIHHRQRK RYSESYNFYP KESDVIKYLL GFAIDEPLPE QHQFMRLVDL YAEKEPWEIL  60
EGTNTNAGYF ITPLKKEKPH HKRFKRIVGK GIWKIQDLAK KVFDDRGRLM GYVHHMKYTP  120
DTNKKSIIKE LFGEWLMTEY SLDNDYVTNM KKKIIYKDFV ICKIKKKKQR RDHDDKGKDE  180
NIMNDVEVNE LIDSVMEELE EIDDNIEVDV GDDFLAALEN ECMNSEDNEI SKNDANDINL  240
DEFDFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KKKIIYKDFVICKIKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000341
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068304.11e-122uncharacterized protein LOC101262060
TrEMBLM0ZGR11e-180M0ZGR1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000004500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-07NAC-domain protein 101
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]