PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000411
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 319aa    MW: 35462.3 Da    PI: 9.997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000411genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-135599147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r +WT++E++++++a +++  + Wk+I + +g  ++  q++s+ qky
  PGSC0003DMP400000411 55 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 99
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-1649105IPR009057Homeodomain-like
PROSITE profilePS5129414.87350104IPR017930Myb domain
TIGRFAMsTIGR015578.0E-1853102IPR006447Myb domain, plants
SMARTSM007179.9E-1154102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-65495IPR009057Homeodomain-like
PfamPF002494.4E-115599IPR001005SANT/Myb domain
CDDcd001673.45E-857100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGDPMKTGLM GLHPVQSGTS IHGNLNLDSN TGLGVVVSDD HSKKTRKPYT ITKSRESWTE  60
QEHDKFLEAL QLFDRDWKKI EAFVGSKSVI QIRSHAQKYF LKVQKSGTSE HVPPPRPKRK  120
AAHPYPQKAP KKVMSQVGSI QFQPPGALPE PGFGIGPDPL SVSGNTINFS PWTYDNVPAI  180
STTQMRKDDA QLSSGGVMQN CSSSSNEYIP RINKTKESND QKESQKQMKV MPDFAQVYSF  240
IGSVFDPSTR DHLQRLKKMD PIDIQTALML MKNLSFNLSS PEFEDHRRLL SSYGLGAEKD  300
KMGLPIKTDF RGNAIQAV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339625.10.0PREDICTED: protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-101RVE6_ARATH; Protein REVEILLE 6
TrEMBLM0ZGW90.0M0ZGW9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000005460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-89MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]