PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000561
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 145aa    MW: 16405.1 Da    PI: 8.895
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000561genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA338.6e-11122141120
                  GATA   1 CsnCgttkTplWRrgpdgnk 20 
                           Cs C+ttkTplWR+gp g+k
  PGSC0003DMP400000561 122 CSDCNTTKTPLWRSGPKGPK 141
                           ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-5119140No hitNo description
Gene3DG3DSA:3.30.50.105.7E-8120141IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.341120139IPR000679Zinc finger, GATA-type
PfamPF003203.1E-8122141IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSLVSPYNNN YQFSSSSTNS SCQTFFNIST TTNIQDQSGY DYHSHQFHQP QHQHEVDNFA  60
SRSSGSHDHL EKKNKGLKLT LCKKGEQKMK NLKLEDQKQQ IIETDYSSNS SSNNNIIPIR  120
VCSDCNTTKT PLWRSGPKGP KVIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-129HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353530.11e-100PREDICTED: putative GATA transcription factor 22
TrEMBLM0ZH961e-102M0ZH96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000007611e-100(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-11GATA family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]