PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000665
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 173aa    MW: 19583.8 Da    PI: 10.0175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000665genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-161054347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT+eE+ +++++ ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  PGSC0003DMP400000665 10 PWTEEEHRRFLNGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 54
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.988159IPR017930Myb domain
SMARTSM007171.6E-10757IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-17860IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-12953IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-19958IPR006447Myb domain, plants
CDDcd001673.14E-101055No hitNo description
PfamPF002495.8E-131054IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MFILDELGVP WTEEEHRRFL NGLEKLGKGD WRGISRNFVT TRTPTQVASH AQKYFLRQSS  60
LNKKKRRSSL FDMARSNNKY VDFGHNCQED GQEITRSSPL DLNSFGEKCE NSIWSYGSQN  120
SHHNKVPNKS ISSNGTLDLE LSLSSPRNNI VEKNNSSSSK TTFMNIGPIR VT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-132HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353528.11e-118PREDICTED: transcription factor MYB1R1-like
TrEMBLM0ZHJ01e-124M0ZHJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009021e-118(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-27MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]