PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000732
Common NameLOC102600055
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 231aa    MW: 26162.1 Da    PI: 10.5499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000732genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-12123212181
                           EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                    B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                           f+k+lt+sdv ++ grl l ++++++         +++ ++++ ++  d+ g+  ++ ++ +++ ++y+l + Wk+Fv+++gLke D v
  PGSC0003DMP400000732 123 FVKQLTNSDVDEHqGRLLLNNEYVRKQllpllnekSEDLTTGISVKTFDPMGKYCNMIFKTWGNHKTYLLLGSWKQFVQEHGLKESDRV 211
                           99**********9899**************99866333347778888899**999999999**************************88 PP

                           E CS
                    B3  81 v 81 
                           +
  PGSC0003DMP400000732 212 T 212
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.41E-13123226No hitNo description
Gene3DG3DSA:2.40.330.101.7E-16123216IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-8123212IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-17123220IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.432124230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVKLEKEDIE AALLLSWLKY VPVEPKIVEK SKRKLRRINK NETPELQISK SVKNSPSASG  60
AGNPKRVRLS SNFNGREAAS SSRNSNPVPK RGRTLPSNLP GSLPKFPPIE NLRTLIGQCS  120
NPFVKQLTNS DVDEHQGRLL LNNEYVRKQL LPLLNEKSED LTTGISVKTF DPMGKYCNMI  180
FKTWGNHKTY LLLGSWKQFV QEHGLKESDR VTGWMFRHSR TGELCFALTW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000732
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353478.11e-169PREDICTED: B3 domain-containing protein At1g05920-like
TrEMBLM0ZHP61e-168M0ZHP6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009911e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-27B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]