PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000947
Common NameLOC102595800
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 208aa    MW: 24004.5 Da    PI: 8.7295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000947genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-181562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
  PGSC0003DMP400000947 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62
                          79********************************************97 PP
2Myb_DNA-binding54.52.6e-1768111146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  PGSC0003DMP400000947  68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-23865IPR009057Homeodomain-like
PROSITE profilePS5129415.771062IPR017930Myb domain
SuperFamilySSF466893.01E-3013109IPR009057Homeodomain-like
SMARTSM007171.0E-121464IPR001005SANT/Myb domain
PfamPF002493.2E-161562IPR001005SANT/Myb domain
CDDcd001671.04E-91762No hitNo description
PROSITE profilePS5129425.31663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2566117IPR009057Homeodomain-like
SMARTSM007173.4E-1567115IPR001005SANT/Myb domain
PfamPF002493.2E-1668111IPR001005SANT/Myb domain
CDDcd001671.43E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDKRTCDSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKQA  120
ENMNRISSNI SEHNNIQQAS TSQTSTSLAD SIETYSGNNN NNNNNNNNNN NNNNMGTTFH  180
HQGNFPNENI WSMEDLWSMQ LLNDANN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000947
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153531e-136AC215353.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011A02, complete sequence.
GenBankAC2158531e-136AC215853.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0031A13, complete sequence.
GenBankHG9755141e-136HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338574.11e-150PREDICTED: myb-related protein 340-like
SwissprotP813963e-94MYB40_ANTMA; Myb-related protein 340
TrEMBLM0ZI771e-149M0ZI77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000012781e-150(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-79myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]