PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001206
Common NameLOC102590170
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 242aa    MW: 27192.7 Da    PI: 5.2293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001206genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000293685154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          +r  + erE+  R+++N+ f  L + l  +     + + Ka++L +A +++k++
  PGSC0003DMP400001206 36 KRIHKAEREKMKREHLNELFLGLADALELS----EQMNGKASVLSEAARFVKDM 85
                          688899*********************997....67799999999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.64E-43390No hitNo description
Gene3DG3DSA:4.10.280.102.9E-633106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-1033105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4173585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDTENPAPIV EKDATDAETS LDSSHLGKKI QKKVPKRIHK AEREKMKREH LNELFLGLAD  60
ALELSEQMNG KASVLSEAAR FVKDMLSQIK HMRTENTTLL SESQYLSVEK KELEDENTAL  120
EAEISKLQTE VKAREAETSL DLNLAPPEIH HTEFASQTNY MRLPASEHAF QQSQMMNPVY  180
VFPLSSNPQA YPAPDAADSM AMPTSTVKKP QPRYPTPNDV WPSQILEKRP QLLRQEVQDG  240
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364187.11e-178PREDICTED: transcription factor bHLH47
TrEMBLM0ZIT31e-176M0ZIT3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000016171e-177(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43071934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-48bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]