PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001214
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 225aa    MW: 24991.8 Da    PI: 8.61
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001214genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.46e-094870325
                          S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                          +++C +f++ G+C yG+rC++ H
  PGSC0003DMP400001214 48 RSICTRFQKWGYCTYGERCRYVH 70
                          689******************** PP
2zf-CCCH34.24.2e-11134159227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+++ r G C +G++C+FaHg+
  PGSC0003DMP400001214 134 KTRLCNRWERDGSCFFGAKCQFAHGR 159
                           9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9674573IPR000571Zinc finger, CCCH-type
SMARTSM003560.00614772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-64872IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-64870IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-64971IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-8131159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-11132159IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018132160IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8134159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSLVNNSEI SSKCDEYSDK KCGSNFNVEC VLKKPTETNS RMAQEGNRSI CTRFQKWGYC  60
TYGERCRYVH TTGGSTYGPL QGGGYDQSYV EEGKSEYRES AAITIVTGGD EVKNKSYSDN  120
VEPKRFVDFR TRMKTRLCNR WERDGSCFFG AKCQFAHGRA GIFAFIALQG YGSSNPLVSS  180
SNAGISAPTK NVAPNEIGSS APAERRFKWN DVRKISQVYG DWIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069378.11e-143zinc finger CCCH domain-containing protein 56-like
TrEMBLM0ZIU11e-166M0ZIU1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000016281e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-17C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]