PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001342
Common NameLOC102583010
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 195aa    MW: 21447 Da    PI: 5.8565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001342genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-201969155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ++y+GVr ++ +gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+++l+g
  PGSC0003DMP400001342 19 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 69
                          68********.**********72....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-141969IPR001471AP2/ERF domain
CDDcd000186.32E-201976No hitNo description
Gene3DG3DSA:3.30.730.107.9E-332077IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-222078IPR016177DNA-binding domain
SMARTSM003804.0E-382083IPR001471AP2/ERF domain
PROSITE profilePS5103223.3272077IPR001471AP2/ERF domain
PRINTSPR003671.8E-112132IPR001471AP2/ERF domain
PRINTSPR003671.8E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRHRKSSELK RPGSDADPPR YRGVRKRPWG RFAAEIRDPI KKTRVWLGTF DTAEDAARAY  60
DDAARALRGP KAKTNFNMLP LTEDSYDEAN QFELFPNSRP ASSSMSSTLE SSSGPLGGSS  120
CKVTRMKIPR PVLPLEDCRS DCDSSSSVVD DRCDVDQTSS FLAKQPLPFD LNLPPPSDND  180
GVDVDDLHVT ALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-211376771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001342
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357978.11e-139PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE43e-32ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLM0ZJ531e-138M0ZJ53_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000018201e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137791113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-21ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]