PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001476
Common NameLOC102603113
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 289aa    MW: 32700.6 Da    PI: 6.9327
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001476genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.24.3e-417106199
                DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +CaaCk+lrrkC+++ Cv+apyfp +qp+kf+nvhk+FG+snv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+
  PGSC0003DMP400001476   7 PCAACKFLRRKCTQQeCVFAPYFPPDQPRKFENVHKVFGRSNVAKLLNELNATQREDAANSLAYEAEYRLRDPVYGCVGLISILQHKLK 95 
                           7***********9866************************************************************************* PP

                DUF260  89 qlkaelallke 99 
                           q++ +l  +k+
  PGSC0003DMP400001476  96 QVQDDLLNAKK 106
                           ****9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.176108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-407104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ QECVFAPYFP PDQPRKFENV HKVFGRSNVA KLLNELNATQ  60
REDAANSLAY EAEYRLRDPV YGCVGLISIL QHKLKQVQDD LLNAKKDLAT YIGPQAMLPM  120
LQHSGYIQQH PNNNPSSSNM MAYNMQPMGL QQQLMMRDPQ QQQQQQNQQQ VIEAHQLAAV  180
MAAREQEMMR TYEPQQFNNG YDSAGPVTAT GFHQMSSSVS PSLALASFDN DPYQIQQAQQ  240
EQHRGQVQVQ VQPHQLLQQQ QQLPQQPQTP QQQQRANSEE ERSIGPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4431117114LOB family transfactor Ramosa2.1
5ly0_B2e-4431117114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360249.10.0PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ31e-77LBD36_ARATH; LOB domain-containing protein 36
TrEMBLM0ZJH30.0M0ZJH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000020110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-71ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  3. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]