PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001751
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 217aa    MW: 24661.5 Da    PI: 6.1695
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001751genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.34e-29658254
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                          prlrWtp+LHe F+e+v+ LGG +kAtPk+i ++m vkgL ++hvkSHLQ+YR
  PGSC0003DMP400001751  6 PRLRWTPQLHELFIEVVQLLGGGHKATPKRIQQMMAVKGLKISHVKSHLQMYR 58
                          8**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.857262IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-26360IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-23659IPR006447Myb domain, plants
SuperFamilySSF466896.45E-14662IPR009057Homeodomain-like
PfamPF002493.3E-9758IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKSSIPRLRW TPQLHELFIE VVQLLGGGHK ATPKRIQQMM AVKGLKISHV KSHLQMYRNL  60
KERGNLNIVN SVNNFHEETP QFSWSSPYEH VSETILEHGP SKSSKQIDPG SDKFPNYKAI  120
INAYIAENNI YCYDYQEAQG SLSSGMTKEE EEDDGGGPIS SEICEFPHER EINFWPLNDY  180
NHQNSQNDSS TKQVLKSTKD DPHVNLDLSI SSCFYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001751
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754465e-78HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366621.11e-162PREDICTED: uncharacterized protein LOC102600799
TrEMBLM0ZK301e-161M0ZK30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000024101e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94591325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-23G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]