PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001752
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 139aa    MW: 15924.2 Da    PI: 9.563
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001752genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.61.6e-29658254
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                          prlrWtp+LHe F+e+v+ LGG +kAtPk+i ++m vkgL ++hvkSHLQ+YR
  PGSC0003DMP400001752  6 PRLRWTPQLHELFIEVVQLLGGGHKATPKRIQQMMAVKGLKISHVKSHLQMYR 58
                          8**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.857262IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-26360IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23659IPR006447Myb domain, plants
SuperFamilySSF466892.51E-14662IPR009057Homeodomain-like
PfamPF002491.4E-9758IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MKSSIPRLRW TPQLHELFIE VVQLLGGGHK ATPKRIQQMM AVKGLKISHV KSHLQMYRNL  60
KERGNLNIVN SVNNFHEETP QFSWSSPYEH VSETILEHGP SKSSKQIDPG SDKFPNYKAI  120
INAYIAENNI YCYDYQVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-18763460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755192e-57HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366621.16e-98PREDICTED: uncharacterized protein LOC102600799
TrEMBLM0ZK316e-99M0ZK31_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000024102e-97(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.17e-24G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]