PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002114
Common NameLOC102581248
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20313.6 Da    PI: 10.001
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002114genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171260149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          ++i+nk +r vtfskRr+g++KK  ELS LCd    ++ifs+++k   y
  PGSC0003DMP400002114 12 EKIQNKKKRDVTFSKRRTGLFKKETELSALCDSPSVMVIFSPENKSTVY 60
                          579***************************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-19463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.334461IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-21582IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-16626IPR002100Transcription factor, MADS-box
PfamPF003196.7E-191359IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-162641IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-164162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MARSGRKKIR IEKIQNKKKR DVTFSKRRTG LFKKETELSA LCDSPSVMVI FSPENKSTVY  60
SIGYPSVNSI MDKFMKVNPP TNIDDTNSLT VHRKIAIRKV GLELIEINRK LEEEEKRKKR  120
LDTTGSSYEN LNSMQYQQLI ENIEIKFLET ECIAIQLKEC NMPFPYSTFG DALAPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519RKKIRIEKIQNKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340411.11e-127PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM0ZKW11e-126M0ZKW1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000029201e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-19AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]