PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002324
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 210aa    MW: 24059.1 Da    PI: 9.4673
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002324genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP31.43.2e-1022583970
               E2F_TDP 39 vknkrRRiYDilNVLealnliek.....kekneirwk 70
                          v  k RR+YDi+NV+ +lnliek     + k+ +rw+
  PGSC0003DMP400002324 22 VAAKTRRLYDIANVFVSLNLIEKirspdNGKPVFRWI 58
                          55689******************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013720.0051659IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.86E-62158IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-92259IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.8E-82358IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLLCLTYDGK FDRKLVIFHK YVAAKTRRLY DIANVFVSLN LIEKIRSPDN GKPVFRWIAW  60
NENPRSGSLA AAKSDDSTRR TFGAEITNIT PKRYRDDSSS DLMSNGLKRL KVAKDDELKD  120
KKQEISAEQL NERGTKDFVF GPFGPSSLPR SGISGKENLK QIQNWEDLAS KYHPQYQNKA  180
ANELFAHYVE AWESWQVEAA NELHKQHEH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154130.0AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338511.11e-135PREDICTED: E2F transcription factor-like E2FF isoform X2
TrEMBLM0ZLC41e-155M0ZLC4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000032691e-134(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-29DP-E2F-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]