PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002326
Common NameLOC102604112
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 226aa    MW: 25603.8 Da    PI: 7.7937
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002326genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.13.3e-19274870
               E2F_TDP  8 lltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70
                          +l+q+f+kl+++s+ + ++l+++a++L+ +      +k+k RR+YDi+NV+ +lnliek     + k+ +rw+
  PGSC0003DMP400002326  2 ILAQNFVKLFHCSDVDLISLDKAASTLLGDvhdpmAMKTKTRRLYDIANVFVSLNLIEKirspdNGKPVFRWI 74
                          689********************************************************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-9274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-15275IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.8E-15274IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-14375IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MILAQNFVKL FHCSDVDLIS LDKAASTLLG DVHDPMAMKT KTRRLYDIAN VFVSLNLIEK  60
IRSPDNGKPV FRWIAWNENP RSGSLAAAKS DDSTRRTFGA EITNITPKRY RDDSSSDLMS  120
NGLKRLKVAK DDELKDKKQE ISAEQLNERG TKDFVFGPFG PSSLPRSGIS GKENLKQIQN  180
WEDLASKYHP QYQNKAANEL FAHYVEAWES WQVEAANELH KQHEH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154130.0AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338510.11e-168PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLM0ZLC51e-166M0ZLC5_SOLTU; Uncharacterized protein
TrEMBLM0ZLC61e-167M0ZLC6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000032691e-167(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-45DP-E2F-like protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]