PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002379
Common NameLOC102584111
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 298aa    MW: 33595.4 Da    PI: 6.9956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002379genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd  lv  v+++G+g+W+t++ + g++R+ k+c++rw +yl
  PGSC0003DMP400002379 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGLRRCSKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PGSC0003DMP400002379  67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.975965IPR017930Myb domain
SuperFamilySSF466896.5E-3111108IPR009057Homeodomain-like
SMARTSM007174.5E-151363IPR001005SANT/Myb domain
PfamPF002496.6E-171461IPR001005SANT/Myb domain
CDDcd001671.89E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2565117IPR009057Homeodomain-like
SMARTSM007178.3E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.28966116IPR017930Myb domain
PfamPF002499.4E-1567112IPR001005SANT/Myb domain
CDDcd001671.41E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE  120
TSGLYSNDGH CLSTYNSTSR GQWERTLQAD INTAKQALQN ALSLDKSSPI PDYTITDIGC  180
YPYIKQEAKM STTTYASNAE NIAKLLKQWT KSESTNNSEQ SKASSSTQYS CNTNNNNAMT  240
EYSSSFEPSN SDQFSQATTP EAAGKFHGES KREIDDEIQL SVMLESWLFD ENDDLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-281411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-281411658159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-28141164105C-Myb DNA-Binding Domain
1msf_C2e-28141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002379
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338450.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-102MYB06_ANTMA; Myb-related protein 306
TrEMBLM0ZLH70.0M0ZLH7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000033470.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.18e-98myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]