PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002397
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 258aa    MW: 29291.8 Da    PI: 8.5324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002397genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.3e-3427554128
                   NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke+++ +++ vg+kktLvfykgrap+gekt+Wvmheyrl
  PGSC0003DMP400002397   2 GEKEWYFFCMRDKKYPTGQRTNRATEAGYWKATGKDKEIFK-SKTFVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 75 
                           579**************************************.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.5721100IPR003441NAC domain
SuperFamilySSF1019413.79E-382101IPR003441NAC domain
PfamPF023651.4E-16675IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGEKEWYFFC MRDKKYPTGQ RTNRATEAGY WKATGKDKEI FKSKTFVGMK KTLVFYKGRA  60
PRGEKTNWVM HEYRLDGKYS IHNLPKTAKN ECVICRIFKK NSGGKKIAIS NLTRSGSLTD  120
NSRSSNLPPL MDMSPYNNNT QITTTARSSG ETCNSHVTCF SDSVEDQKPQ TYDHYHAPLS  180
SSPVSVDFPS NVPNESMAYM ENFQYGDSGL MQDNSIMRLL IDNNYGSESK QSLRGYEDHD  240
FNITSTGPVD IDCLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-32110668171NO APICAL MERISTEM PROTEIN
1ut4_B6e-32110668171NO APICAL MERISTEM PROTEIN
1ut7_A6e-32110668171NO APICAL MERISTEM PROTEIN
1ut7_B6e-32110668171NO APICAL MERISTEM PROTEIN
3swm_A6e-32110671174NAC domain-containing protein 19
3swm_B6e-32110671174NAC domain-containing protein 19
3swm_C6e-32110671174NAC domain-containing protein 19
3swm_D6e-32110671174NAC domain-containing protein 19
3swp_A6e-32110671174NAC domain-containing protein 19
3swp_B6e-32110671174NAC domain-containing protein 19
3swp_C6e-32110671174NAC domain-containing protein 19
3swp_D6e-32110671174NAC domain-containing protein 19
4dul_A6e-32110668171NAC domain-containing protein 19
4dul_B6e-32110668171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002397
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7409940.0KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338435.10.0PREDICTED: NAC domain-containing protein 92
SwissprotQ9FLJ22e-83NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0ZLJ40.0M0ZLJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000033800.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-85NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]