PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002480
Common NameLOC102598421
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 239aa    MW: 27720.2 Da    PI: 7.5497
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002480genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.2e-201966148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl
  PGSC0003DMP400002480 19 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 66
                          79********************************************97 PP
2Myb_DNA-binding51.52.3e-1672116147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  PGSC0003DMP400002480  72 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 116
                           6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7961466IPR017930Myb domain
SuperFamilySSF466893.26E-3216113IPR009057Homeodomain-like
SMARTSM007171.1E-171868IPR001005SANT/Myb domain
PfamPF002493.9E-191966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-242073IPR009057Homeodomain-like
CDDcd001678.07E-132166No hitNo description
PROSITE profilePS5129424.79967121IPR017930Myb domain
SMARTSM007173.0E-1471119IPR001005SANT/Myb domain
PfamPF002493.2E-1472116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2474121IPR009057Homeodomain-like
CDDcd001679.36E-1076117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVRGMMGWGA NSDEQGWRKG PWTPEEDKLL SEYVNLHGEG RWSSVSRCAG LNRTGKSCRL  60
RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY LPGRTDNEIK NYWRTHFKTK  120
VVKQDKKKIM RQMRNHPQQN YTRTDKKIMS SEAEEVIMIK SDDDNMFISS TNNYDEDPVV  180
ELPPVTTSSD TSYTWTETFP MDELWGGLWN IDDEFKVAIQ NQPNCSYAVN LYNGGFIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25191217108B-MYB
1h8a_C8e-251912127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-67HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338764.11e-180PREDICTED: myb-related protein 340
TrEMBLM0ZLR91e-178M0ZLR9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034791e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-72myb domain protein 121
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]