PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002556
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21352.2 Da    PI: 10.0655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002556genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1985138356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+++++ eq+++Le+ Fe  ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
  PGSC0003DMP400002556  85 KKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWK 138
                           456899***********************************************9 PP
2HD-ZIP_I/II132.41.6e-4284175192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqvk+LE+sFe  +kL+perK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++
  PGSC0003DMP400002556  84 EKKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHS 172
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           e++
  PGSC0003DMP400002556 173 EVR 175
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-2064142IPR009057Homeodomain-like
SMARTSM003894.2E-1983144IPR001356Homeobox domain
PROSITE profilePS5007116.66584140IPR001356Homeobox domain
CDDcd000867.11E-1785141No hitNo description
PfamPF000462.3E-1685138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-2087148IPR009057Homeodomain-like
PRINTSPR000318.5E-6111120IPR000047Helix-turn-helix motif
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PRINTSPR000318.5E-6120136IPR000047Helix-turn-helix motif
PfamPF021837.7E-15140174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MISGTRGIMA FLPSSTPDIS LNFQDNNHHL PSTSPKLFPS PSLPHQDHFN HGVASMLMRR  60
SMSFSGVEDN EMSDDDGSSQ LLGEKKRRLN MEQVKALERS FEVANKLDPE RKIQLARALG  120
LQPRQIAIWF QNRRARWKTK QLEKDYEMLK RHFDSLKTDN DALKAQNKEL HSEVRITLIN  180
FNSSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-146HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338465.11e-124PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
SwissprotQ004665e-58HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLM0ZLY71e-134M0ZLY7_SOLTU; Uncharacterized protein
STRINGSolyc02g087840.2.11e-113(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-60homeobox 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]