PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002557
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27264.2 Da    PI: 6.6317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002557genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-192477356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k+++++ eq+++Le+ Fe  ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
  PGSC0003DMP400002557 24 KKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWK 77
                          456899***********************************************9 PP
2HD-ZIP_I/II131.24.1e-4223114192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqvk+LE+sFe  +kL+perK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++
  PGSC0003DMP400002557  23 EKKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHS 111
                           69*************************************************************************************** PP

           HD-ZIP_I/II  90 elk 92 
                           el+
  PGSC0003DMP400002557 112 ELQ 114
                           997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-191981IPR009057Homeodomain-like
SMARTSM003894.2E-192283IPR001356Homeobox domain
PROSITE profilePS5007116.6652379IPR001356Homeobox domain
PfamPF000463.8E-162477IPR001356Homeobox domain
CDDcd000863.37E-172480No hitNo description
Gene3DG3DSA:1.10.10.607.4E-202687IPR009057Homeodomain-like
PRINTSPR000311.2E-55059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000311.2E-55975IPR000047Helix-turn-helix motif
PfamPF021836.1E-1579120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSFSGVEDNE MSDDDGSSQL LGEKKRRLNM EQVKALERSF EVANKLDPER KIQLARALGL  60
QPRQIAIWFQ NRRARWKTKQ LEKDYEMLKR HFDSLKTDND ALKAQNKELH SELQLLSVKK  120
RESSGGGAIM FNLNKENEGC WSNNGSDDNN NNSIDVNLGT RTSSGDSPFY SKNVFPSGPG  180
PVPLAKFLQS SSTPPDHLNH CNKNNNIDPT VQHEGFCNMF TPVDDHTNFW PWPEQQHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002557
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0129220.0BT012922.1 Lycopersicon esculentum clone 114085R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338465.11e-178PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
SwissprotQ004662e-61HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLM0ZLY81e-178M0ZLY8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000035861e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-57HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]