PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002707
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 254aa    MW: 29824.5 Da    PI: 9.9367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002707genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.1e-181562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT +Ed ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  PGSC0003DMP400002707 15 KGPWTSDEDRLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYL 62
                          79********************************************97 PP
2Myb_DNA-binding51.91.7e-1668112147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  PGSC0003DMP400002707  68 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                           7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7891062IPR017930Myb domain
SuperFamilySSF466892.89E-3012109IPR009057Homeodomain-like
SMARTSM007179.3E-161464IPR001005SANT/Myb domain
PfamPF002491.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-231669IPR009057Homeodomain-like
CDDcd001675.54E-111762No hitNo description
PROSITE profilePS5129424.6563117IPR017930Myb domain
SMARTSM007176.4E-1567115IPR001005SANT/Myb domain
PfamPF002497.1E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2470116IPR009057Homeodomain-like
CDDcd001673.86E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGSSWGFIEE VGWRKGPWTS DEDRLLIEYV KLHGEGRWNS VARLTGLRRN GKSCRLRWVN  60
YLRPDLKRGQ ITPHEERIIL ELHARWGNRW STIARSLPGR TDNEIKNYWR THFKKKSKNS  120
SDNAEKSRAR LWKRQQFQQQ QQQQINNQIN NQIDIKKVMS LPTMPPAKQE MTILYPNNTI  180
DQQDQVGFFY SSMLNNSTSI SQSEPSSSNE DIMWDDLWNL DDFYGHFMIN TTTYNKTNTT  240
PCLQPMATTP AFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271511627127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002707
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340876.10.0PREDICTED: myb-related protein 305-like
TrEMBLM0ZMC00.0M0ZMC0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000037960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-75myb domain protein 79
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]