PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002839
Common NameLOC102596944
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 276aa    MW: 30858.5 Da    PI: 5.6102
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002839genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-2195155257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           r+R+t+t+ ql++Le+ Fe+ n +p+++++++++++l    +++e++V++WFqNrRa+ k+
  PGSC0003DMP400002839  95 RQRWTPTPMQLQILERIFEQgNGTPTKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 155
                           89*****************99**************************************97 PP
2Wus_type_Homeobox101.84.7e-3395157365
     Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  PGSC0003DMP400002839  95 RQRWTPTPMQLQILERIFEQGNGTPTKQKIKDITSELSQHGQISETNVYNWFQNRRARSKRKQ 157
                           89***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.06291156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-1891161IPR009057Homeodomain-like
SuperFamilySSF466896.42E-1993160IPR009057Homeodomain-like
SMARTSM003899.7E-1593160IPR001356Homeobox domain
CDDcd000866.01E-1595157No hitNo description
PfamPF000463.1E-1995155IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEWEKQQQQQ PPVSAPQQTV EELNGAVSGG MFVKVMTDEQ MEVLRKQIAV YATICEQLVD  60
LHKSMASQHD LAGARLGNLY CDPLVTSAGH KITGRQRWTP TPMQLQILER IFEQGNGTPT  120
KQKIKDITSE LSQHGQISET NVYNWFQNRR ARSKRKQQVA ATNTTESEVE TEVESPNEKK  180
TKPEDLQSSH MPTSMAEDLG YENPDVSSGM HSLDPRTSKP EPMFPSDGSS KPAASYGQMS  240
FYGMSNPRMD QLMGKMEVPG SYHPYLHADD YNMTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400571e-112AC240057.1 Solanum tuberosum cultivar RH89-039-16 chromosome 9 clone RH186C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340846.10.0PREDICTED: WUSCHEL-related homeobox 8
SwissprotQ5QMM32e-88WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLM0ZMN10.0M0ZMN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-79WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]