PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400003165

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

S1Fa-like

Protein Properties

Length: 76aa MW: 8568.32 Da PI: 10.6302

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400003165	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	41.9	2.1e-13	1	28	37	64
S1FA 37 vyaqknlPPrkkkPvskkklkreklkqG 64 +yaqk+lPP+kkkPvskkk+k+e+lkq PGSC0003DMP400003165 1 MYAQKTLPPKKKKPVSKKKMKKERLKQE 28 5**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.8E-11	1	27	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MYAQKTLPPK KKKPVSKKKM KKERLKQEPF PPIVFLLIMS EFLGRFVLPA PFLGWIIGIQ 60 EYGLAVNEVS ENHGG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400003165

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0ZNF9	5e-46	M0ZNF9_SOLTU; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400003165

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]