PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003676
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 259aa    MW: 29566.4 Da    PI: 5.2087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003676genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-10173215754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N +++ Lr+++Pk +      K++  +iL  +++Y k+L
  PGSC0003DMP400003676 173 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 215
                           79*********************66......**************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14170235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-8173215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-14173228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEDYYRENEF LLDELFALRS DLWESTCLPM EINSSSSNLY SNNINYDCFG EIPLPSTTTT  60
TTTTSFEDYY NNFPIDQSQN YSLLHSEFYS TQKVDVLSPL ELTNSFNSPF TSQLEDFSSI  120
YFDVGNFGDC KLERTQSTAS SAAIAPANFN IGVCLDKKAK TKKVNGEPSK NLMAERRRRK  180
RLNGRLSMLR SIVPKISKMD RTSILGDTID YTKELLEKIN NLQQEMKLGS NQLSLMSIFK  240
NEKPIEMFVR NSPKRCVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060938.11e-156transcription factor bHLH93-like
TrEMBLM0ZPM30.0M0ZPM3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000052090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.21e-30beta HLH protein 93
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]