PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400003828

Common Name

LOC102585418

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 246aa MW: 28589.6 Da PI: 5.0511

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400003828	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	221.4	4.6e-68	2	238	136	373
GRAS 136 pegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224 p+gpp+lRiTg++ p++g + eetg+ La+++e+++vpfe+n++v +++e +e+++L++++gE +aVn+ ++ ++l de+v++e +r PGSC0003DMP400003828 2 PGGPPKLRITGINLPQPG-FRPAEETGRLLARYCERFNVPFEYNAIVIQNWERIEIKDLKLESGEFVAVNCLFRFENLSDETVDVECPR 89 689*********8865.66789************************************************************* PP GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 d+vL+l+++++P+++v + ++ns+ F++rf eal +ysalfd+++a+lpr++++r E+el +re++nv+acegaer+er et+e PGSC0003DMP400003828 90 DAVLSLIQKMNPDIFVQGVTNGSYNSPFFVTRFQEALLHYSALFDMFDATLPRDNQQRLHFEQELYRREAMNVIACEGAERVERPETYE 178 ************************************************************************************* PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +W+ r +aGFk +pl+++++k+ k ++ + + + + e+ +++v+gWkdr + + S+W PGSC0003DMP400003828 179 QWQVRNVRAGFKILPLNQEVMKTLKDNVEAGYHRDFVLYEDGNWMVQGWKDRIICASSCW 238 *************************999899*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.574	1	219	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-65	2	238	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MPGGPPKLRI TGINLPQPGF RPAEETGRLL ARYCERFNVP FEYNAIVIQN WERIEIKDLK 60 LESGEFVAVN CLFRFENLSD ETVDVECPRD AVLSLIQKMN PDIFVQGVTN GSYNSPFFVT 120 RFQEALLHYS ALFDMFDATL PRDNQQRLHF EQELYRREAM NVIACEGAER VERPETYEQW 180 QVRNVRAGFK ILPLNQEVMK TLKDNVEAGY HRDFVLYEDG NWMVQGWKDR IICASSCWIP 240 LHRSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-22	2	240	154	380	Protein SCARECROW
5b3h_A	5e-22	2	240	153	379	Protein SCARECROW
5b3h_D	5e-22	2	240	153	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400003828

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015169567.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	1e-107	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M0ZPY5	0.0	M0ZPY5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400005480	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-109	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400003828
Entrez Gene	102585418

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]