PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004244
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 289aa    MW: 31831.5 Da    PI: 6.9245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004244genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002898120123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ Cgk F++   L  H  +H
  PGSC0003DMP400004244  98 YKCSVCGKGFRSYQALGGHKASH 120
                           9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-797120No hitNo description
PfamPF139125.2E-1298122IPR007087Zinc finger, C2H2
SMARTSM003550.007598120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55498120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-498120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-7153180No hitNo description
PfamPF139124.4E-8157182IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559158185IPR007087Zinc finger, C2H2
SMARTSM003555.1158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALEALNSPT GTSNPQTFQF ERKGQQQLRY LENWTKGKRS KRSRSMDRQP TEEEYLALCL  60
IMLARSDGSV NQVRSLPPPV PVMKIHTTLE KIEEKMLYKC SVCGKGFRSY QALGGHKASH  120
QKLIAGGGGG DDQSTTSTTT NATGITSSGN SNGSGRTHEC LICHKCFPTG QALGGHNRYH  180
YDGDNANSSV STSVGVTSEE DVGSTISHPY FDLNIRALPE FCPGFGSGKD EREMSRVGVE  240
LMEIEKEVTE EMRDGDDEVK RILPWNKTDY STRNCEIGTR LERFGSFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-167HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162804.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLM0ZQV20.0M0ZQV2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000061260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-41salt tolerance zinc finger
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]