PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004390
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 168aa    MW: 18695.8 Da    PI: 9.7725
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004390genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA50.66.2e-16130164136
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                           dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rk
  PGSC0003DMP400004390 130 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRK 164
                           79****************************.99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-4128167IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115218.785129167IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-10131164IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSTFPGPQNS KELNYHFQDQ DSSSTQSTSQ SCPEAANEGE RKSHGKSSMP LRAGSVRSSG  60
KSDDSQSVSS QEHGWTFDMY QKNFAVVPFP HPDPYYHGLV AAYGNQAMVQ SQMLGMVSPR  120
VPLPLDLKQD EPIFVNAKQY QAILRRRQYR ARLEAQNKLS KGRKVSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-81HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342951.11e-119PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLM0ZR721e-121M0ZR72_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063581e-118(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.27e-23nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]